Description of the files present in this directory:

- protmdl.m
    Proteome model

- Proteomap.m
    Plots the proteome allocation in a proteomap.

- ProteomeOptimization_CH_X.mat
    Pre-generated optimized steady-state proteome, included as example.

- ProteomeOptimization_CH_X_opt.mat
    Pre-generated optimized steady-state proteome, with overcapacity calculated,
    included as example.

- ProteomeOptimization_Crabtree_X.mat
    Pre-generated optimized series steady-state proteomes for D = 0.05 - 0.4 h-1,
    included as example.

- simOvercapacity.m
    Determines the minimal proteome allocation for specific conditions by
    removing the part of the proteome that can be removed without changing 
    the growth rate.

- simOvercapacity.m
    Determines the minimal proteome allocation for specific conditions by
    removing the part of the proteome that can be removed without changing 
    the growth rate, for a series of generated steady-state proteomes.
